PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g25540.2
Common NameLR48_Vigan02g009800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 126aa    MW: 14491.9 Da    PI: 6.0279
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g25540.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-181868255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+++AeIrd  +   + +r +lg+f tae+Aa+a+++a+ +++g
  Vang06g25540.2 18 KYRGVRRRP-WGKYAAEIRDSMK---HgQRSWLGTFTTAEDAARAYDRAAYAMRG 68
                    8********.**********444...35*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.26E-181878No hitNo description
PfamPF008471.4E-121868IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-241878IPR016177DNA-binding domain
SMARTSM003801.8E-351882IPR001471AP2/ERF domain
PROSITE profilePS5103223.1031876IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-311878IPR001471AP2/ERF domain
PRINTSPR003672.0E-101930IPR001471AP2/ERF domain
PRINTSPR003672.0E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEEEGSKGKA KDEEEHVKYR GVRRRPWGKY AAEIRDSMKH GQRSWLGTFT TAEDAARAYD  60
RAAYAMRGPF AVLNFPDSVS TSSHGHVERR GRNEDENQVF EFEYFDDKLL EELLGYDEDK  120
SKHGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-261981668ATERF1
3gcc_A4e-261981668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-126AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511322.17e-60PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LSX05e-35ERF96_ARATH; Ethylene-responsive transcription factor ERF096
TrEMBLA0A0L9TTQ63e-67A0A0L9TTQ6_PHAAN; Uncharacterized protein
STRINGGLYMA02G00890.12e-40(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-33Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]